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An Empirical Demonstration of Unsupervised Machine Learning in Species Delimitation
Research
Resources
biology
Coevolution + Structure Prediction
WS_2019
Tools
c++ notes
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WS_2019
WEEK1
Google Colab
https://colab.research.google.com
Introduction to Tensorflow
Notebook
(Linear regression)
Optional:
Advanced Notebook
(Dense layers)
Introduction to Sequence models
Slides
Notebook
(PSSM, MRF)
WEEK2
Introduction to GREMLIN
Slides
Notebook
(MRF-Pseudo-likelihood, PCA)
Optional:
Advanced Notebook
Full GREMLIN implementation
Introduction to Dimensionality Reduction
Slides
Notebook
(PCA, MDS, TSNE, Autoencoders)
Application of V/Autoencoder to Bio Sequences
Slides
Notebook